First you need to un-install the Silverlight 2.0 Beta 1 SDK from the build server! Then you can download the Microsoft Silverlight Tools Beta 2 for Visual Studio 2008 and extract it on the server, there you will find the file silverlight_sdk.msi, that will allow you to install Silverlight 2.0 Beta 2 SDK.
Now if you followed my post MSBuild and Silverlight 2.0 Beta 1 running in Team City, then you know about the issue:
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